VISDB Viral Integration Site DataBase

VIS ID

TVIS10019220

Fusion event

HBV-FN1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216244041/215379318 (Hg38)

Location type

Intron13

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1620968; hsa-mir-1244-1/Downstream/2521195;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/66718, chr2-CpG: 43/Downstream/56226

Upstream sequence

CCAGGCGGATTTTGCCTAGGCAGAATGGGCTACCAATTTACTAACATTTCCAAAGAGACTACAGGTGTTAGGCCCATGGTTGCAGGGGTTTTCTACCTCG

Downstream sequence

TGTCGAGATTGTCATTGGTTAGAGGTTATCTTATAGGAAATGGGGGAAAAGGAAAATAAAGTGAGTTCCAAGAAGTAGAATGGATTGTTCTTGTTGGGCT

Target sequence

ACCATAAGTCCTGATACAACCACGGATGAGCTGTCAGGAGCAAGGTTGATTTCTTTCATTGGTCCGGTCTTCTCCTTGGGGGTCACCCGCACTCGATATCCAGTGAGCTGAACATTGGGTGGTGTCCACTGGGCGCTCAGGCTTGTGGGTGTGACCTGAGTGAACTTCAGGTCAGTTGGTGCAGGAATAGC