FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019224
Fusion event
HBV-FN1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
216297800/215433077 (Hg38)
End
216297889/215433166 (Hg38)
Location type
Intron43
Target gene
FN1
miRNAs that regulate target gene
hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p
Nearest miRNA
hsa-mir-10b/Upstream/1674918; hsa-mir-1244-1/Downstream/2467347;
Nearest TSS
ENST00000437798/Upstream/11807; ENST00000412951/Downstream/2901;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/120668, chr2-CpG: 43/Downstream/2378
Upstream sequence
gcccagttatttgaattcactatgcctcagttcctttgttcctaaaatgtcgataataaaagtttctgggcttgatgtaagtactaaatggcttaataca
Downstream sequence
AGGAACCAGTTGGGTGACCACTTAAGAGTACCTGGTCACCAGGGGCAAACCTCAAAGTTCGGAATATCCAGTCATGGATAACAGAAAATGACAGTGATGG
Target sequence
acacacactcataaatgcacacacactcataaacgcacacacatcaaacacTGATTCCATCTGTGCTCATACCCGTCTTTAAGAAACAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate