hsa-mir-4659a-3p _LIHC.png
SUCLG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019225
Fusion event
HBV-SUCLG2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
67580432/67530008 (Hg38)
End
67580432/67530008 (Hg38)
Location type
Intron9
Target gene
SUCLG2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-92a-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-627-3p ; hsa-mir-6734-3p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-6887-3p ; hsa-mir-3127-3p ; hsa-mir-6793-3p
Nearest miRNA
hsa-let-7g/Upstream/304481; hsa-mir-12124/Downstream/1518950;
Nearest TSS
ENST00000440867/Upstream/1786; ENST00000464420/Downstream/124599;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/531159, chr3-CpG: 45/Downstream/124196
Upstream sequence
aagagtatgggggggcagggaacagtgtccagccaaagaggaaaggcttgtgcaaagaccccatggcaTACCACATTACAGGAACGACAAGAGAACACCA
Downstream sequence
CTCCAAATCAAATATGTTTAATAAACCAAATAGCACACAACTGCAGACCACAGCTGATATCCTCTGTTTGTGAGTCATCTTTATTTAAAATCACAGAACC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate