Basic Information
VIS ID
TVIS10019228
Fusion event
HBV-LOC101930041 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69768185/68902467 (Hg38)
End
69768185/68902467 (Hg38)
Location type
Intronic
Target gene
LOC101930041
Nearest miRNA
hsa-mir-12113/Upstream/2625539; hsa-mir-1243/Downstream/7671101;
Nearest TSS
ENST00000502981/Upstream/86472; ENST00000502942/Downstream/4516;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/552264, chr4-CpG: 55/Downstream/1785670
Nearby gene
UGT2A3
Upstream sequence
AAGCTGCTCCTGCAAGGAGTGCAAACATTTTCTCCTGGAAGGAATGTTTACTTCAGGGCAACTAACACAGGAACAAGTCTAGGAAGATATAAAATTCACT
Downstream sequence
tggagtcgccattgcagcttgctttgcctctttgtctgtctttctgcttcctttagcctctaatgttcctgccttttgcctacattgcattactgctacc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate