Basic Information
VIS ID
TVIS10019229
Fusion event
HBV-LINC01019 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
3486837/3486723 (Hg38)
End
3486837/3486723 (Hg38)
Location type
Intron3
Target gene
LINC01019
Nearest miRNA
hsa-mir-4277/Upstream/1777855; hsa-mir-10397/Downstream/3341130;
Nearest TSS
ENST00000502646/Upstream/33907; ENST00000302006/Downstream/17281;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/160192, chr5-CpG: 53/Downstream/48793
Upstream sequence
ATAATCAAATGCAGTGAGGATGGTGGGGCATTTGAGAAATGTGTAATACACTTGGCATAACCCTGTGATAGGTTGGATGTGGGAGGTGAGAAGCTAACCT
Downstream sequence
gcataacactgtgaatatactagatgccactgaactgtacacattaaaatgattaaatttgtgGCCGGGCATAGCAGCCCACAACTGAACGAGAGGCATG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate