CTNND2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019230
Fusion event
HBV-CTNND2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
11200610/11200498 (Hg38)
End
11200699/11200587 (Hg38)
Location type
Intron12
Target gene
CTNND2
Nearest miRNA
hsa-mir-10397/Upstream/722353; hsa-mir-103a-1/Downstream/3625342;
Nearest TSS
ENST00000502646/Upstream/83006; ENST00000505877/Downstream/184184;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/438685, chr5-CpG: 115/Downstream/183982
Nearest cancer related gene
CTNND2(OG, No orient, 0)
Upstream sequence
ATTACACATTCTTCACTTGTAATGCTAGAGTAATCCTAATGAGTTTCCTGTGATCATTTTTCTTTTAGATTAAATGCTTTTTCTCAATCCCCCCAAATTT
Downstream sequence
TTTTGATTACAGAAAAACTCATTCATGTCACAGATGTGCTGGGACACCTGGCTACATCCCCAGCCTCTTTCTTTTCTCTttctttcttttcttttttctt
Target sequence
GCATGATTCGTGCAGGAATACCCTTCTTTTACACTTTATGCTTCACCGTTCTTCAGGGATCGAAGGATTAGCATCTTCTCTACTTAATT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate