Basic Information
VIS ID
TVIS10019232
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
55560727/55695929 (Hg38)
End
55560730/55695932 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2418858; hsa-mir-10524/Downstream/1694200;
Nearest TSS
ENST00000381078/Upstream/116715; ENST00000426453/Downstream/179632;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/116635, chr6-CpG: 19/Downstream/551458
Nearby gene
BMP5
Upstream sequence
TCTGCTTGACAGTTGGGACACAATCCTTCCTCTGGAAGAGCAAATAGGTGAGAGAAGCCAATAAGTACTTGAAAAAGGAGACTGGGGGCCAGAACACTAG
Downstream sequence
ACCTCTCTATTTTTACTTATACTCTTCCCTCACCCTCAAATGCTCTTTTCTCCTCCTATTTCTAATCGAAGCTTAAGGATTTCTGCTAAGTTACATATCC
Target sequence
TTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate