Basic Information
VIS ID
TVIS10019233
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
79544313/78834596 (Hg38)
End
79544892/78835175 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/295287; hsa-mir-1202/Downstream/11477567;
Nearest TSS
ENST00000381078/Upstream/21293; ENST00000607739/Downstream/32297;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1183969, chr6-CpG: 46/Downstream/32266
Nearby gene
IRAK1BP1
Upstream sequence
aatgaaagtgaaataaagagatttccagacagacaaaaactgagatggtttataagtagctgacagacactaaaggaaaaactaaatagtttttcaggta
Downstream sequence
aagattctacatagattctatatagatagattcgatgttttcctctctgatttagcagatttgcagagttgtctacattcagatggtcctctggtgttta
Target sequence
AAAATAAACTATTCATTATAATTAAAAATTTTACTCATATGGTTTAAATGATCAGAAAGCAATAAACATAAAATTTCATATTTCATATCTAAAATAATAATAGTAATAATACCCTGCAATTTCCTCTTATGACTTGTAACACTTGCTGATTGACATATTTTTAAATCTACCAGTTTTCAGGTATCAAATTTAATTATGTAACAGTTTTATGTTTATAATTTCATATTTGTTTAATTGCATTTTGAATAAACAAAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate