RARRES2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019237
Fusion event
HBV-RARRES2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150038733/150341644 (Hg38)
End
150038733/150341644 (Hg38)
Location type
Exon6
Fragile sites / regions
FRA7I
Target gene
RARRES2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10399/Upstream/2963523; hsa-mir-153-2/Downstream/896777;
Nearest TSS
ENST00000635602/Upstream/1; ENST00000487455/Downstream/16;
Nearest CpG islands
chr7-CpG: 93/Target, None/Upstream, None/Downstream
Upstream sequence
TTACCACATATATAAATTAAGATATAAATACAAGGTAAATTGGGGACTAAACTTTAAGAATCAGAGTTGGTAGTTTCTCATTCTCTAAACAGGCTTTATT
Downstream sequence
CTCTTCCCGCTCTTCTTCTCGCGGGGCGGCCCCCACCTCCTCCCACCCCCACCTCCTGGACCCCCTCCAGCAACTCTGGCTCCTCCCCTCCCCAGTGGGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate