Basic Information
VIS ID
TVIS10019239
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
115847195/114834966 (Hg38)
End
115847199/114834970 (Hg38)
Nearest miRNA
hsa-mir-12123/Upstream/2191383; hsa-mir-10400/Downstream/2039758;
Nearest TSS
ENST00000518652/Upstream/552830; ENST00000415088/Downstream/657251;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1402110, chr8-CpG: 33/Downstream/813235
Nearby gene
TRPS1
Upstream sequence
tgccaggccctgagactgtggtaaagagggatcctgtcttattcatatttgtatttattagagaaacacataagtgctctgttaatagttatgaatcgaa
Downstream sequence
gTTTTTCTCTTCATTTGGTATTTGCAAGGGACCCAGTGATAAGCAACAGCTGGAAGGCTGAAAGAGCAGCAGTAGAGATTTCAGCACCTGCCAACCAACC
Target sequence
cttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate