GDA _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019241
Fusion event
HBV-GDA integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
74744591/72129675 (Hg38)
End
74744591/72129675 (Hg38)
Location type
Intron1
Target gene
GDA
miRNAs that regulate target gene
hsa-mir-492 ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-2/Upstream/1319591; hsa-let-7a-1/Downstream/11840073;
Nearest TSS
ENST00000422679/Upstream/15080; ENST00000477618/Downstream/19676;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/217912, chr9-CpG: 71/Downstream/19650
Upstream sequence
GTTGGGGTATCAGACACAGCCCCATCCCCAGGGAGGCCTCCAGTGCCAGGGCAGAACTGCCCATGCCCCTTGCCCGGCCCTCACCAGACCTGTTCCCTGC
Downstream sequence
CCTGCTTGGATTTGGCCTGGGCGGCCGTAGGGCCCTTCTTGCGCAGCACCGTCACCGTGTCCCAGTCGCTCTCGGCCATGGCGGGCGAAGACGAGCGTCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate