GDA _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019242
Fusion event
HBV-GDA integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
74746488/72131572 (Hg38)
End
74746733/72131817 (Hg38)
Location type
Intron1
Target gene
GDA
miRNAs that regulate target gene
hsa-mir-492 ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-2/Upstream/1321488; hsa-let-7a-1/Downstream/11837931;
Nearest TSS
ENST00000422679/Upstream/16977; ENST00000477618/Downstream/17534;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/219809, chr9-CpG: 71/Downstream/17508
Upstream sequence
accaattaaaatcatgagatataattcatgactacaagtttggcaaaaatataaatatggaataatatcaagcaatgccattaatagagagcaaagaggg
Downstream sequence
agaactatacccctttatattagtctgttttcatgctgctgataaagacatacccaagcctggaaagaaaaagatgtttaatggaattacgtttccacat
Target sequence
caGccctgaaccctctgagcctgcacaaatggcccacttctctttatggagggctagaaacacaccacgtgcacagacacacacacacacaaacacacacacatcaattccaaggcctctctacaagacatcatgtactctcttcagggtgtcacccatcttccctcctcactgctaggtcaataactagggttaagtcataaagtaactgtgtcaagaaaatgctcgactgctatgggaggaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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