Basic Information
VIS ID
TVIS10019244
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
36996362/36974812 (Hg38)
End
36996451/36974901 (Hg38)
Nearest miRNA
hsa-mir-1343/Upstream/964608; hsa-let-7a-2/Downstream/6584755;
Nearest TSS
ENST00000527297/Upstream/376533; ENST00000532562/Downstream/963700;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/464345, chr11-CpG: 49/Downstream/6336988
Nearby gene
C11orf74
Upstream sequence
ATATAAAATGCACTGTCTTTGAACTAATGAAGAAAATTTGAATTTGTATGCCTATGAGATAAAATTTAATGAAAATAGTTTTTAAACTAAGTACAGAATT
Downstream sequence
TTTAttaatttacagcttcctcttccttccctttctttttgttacattttgtctgttatagaccatgactcatttatcacagttagagttttctcaatac
Target sequence
GACCATTACCTTTTTATTAGTTATTTCCTTGTATTTTTTTTATAGTTTAAGCAACCCAGTTTGCAATACTAGACCATAATCTTGCCCAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate