OR9Q1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019245
Fusion event
HBV-OR9Q1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57858651/58091179 (Hg38)
End
57858740/58091268 (Hg38)
Location type
Intron2
Target gene
OR9Q1
miRNAs that regulate target gene
hsa-mir-876-3p ; hsa-mir-5087 ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-3613-3p ; hsa-mir-2355-3p ; hsa-mir-607 ; hsa-mir-676-3p ; hsa-mir-3671 ; hsa-mir-4775 ; hsa-mir-668-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4762-5p ; hsa-mir-501-5p ; hsa-mir-500a-5p
Nearest miRNA
hsa-mir-129-2/Upstream/449893; hsa-let-7a-2/Downstream/1503809;
Nearest TSS
ENST00000527297/Upstream/31041; ENST00000612174/Downstream/28176;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/337898, chr11-CpG: 132/Downstream/486932
Upstream sequence
AGGGAGTAGGATCCTGAGGGAGGAGACCCCCCCACCACCATTTattcagtcattcaacaagcacttactgaCAAAATCAAACATGGCAGCAGGTCTGGGG
Downstream sequence
ttgtaggcatttagtgctataaattcgcttcttaacactaatttggctgtgttccagagattctggtatgttgtctctttgttctcactggtctcaaaga
Target sequence
tgctagctttcgaatgtgtttgctcttgcttctctagttcttttaatcgtgatgttaggctattgattttagatctttccagctttctg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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