KIRREL3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019246
Fusion event
HBV-KIRREL3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
126829773/126959877 (Hg38)
End
126830241/126960345 (Hg38)
Location type
Intron13
Target gene
KIRREL3
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-let-7a-2/Upstream/3578365; hsa-mir-3167/Downstream/28113;
Nearest TSS
ENST00000527297/Upstream/19083; ENST00000531585/Downstream/32107;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/542902, chr11-CpG: 27/Downstream/39985
Upstream sequence
tgtgattcatcacacaaacataattaaaaacaaaaaccacattaccatctcaataaatgcaggacaaacatccactaaaattcagcatccttaatgacta
Downstream sequence
GGGTTTGTCATTTTCAGATATCCAGCCGAGGACACTGAACCAAACGTAGTTTTTCTAAAGAGGCCCTAGGTTATATTTAAAGTTCTCCCAGTGCTCACTC
Target sequence
ACTGCTATAGACCACGTGTCACCATTGCTCGTACTCACTGCACATGTTTGTATAAGCCTTTCTACGCTGGATTCTGTACTCCTTCTGGGTAGGAATCCTCACTGATCCACTGTTTATTGTTTTTTTAATCCCTCAGTTCTCAGCAATGTACTTAGCCAATATTAGATACTTAGCACATGACTGACATCtgaatgaatgattgaatgaatgaatgaCTTCCCTTGGAAGTCCATGGGGTATAGGGAAGGAGGCAGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate