Basic Information
VIS ID
TVIS10019247
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
18359654/18206720 (Hg38)
End
18360532/18207598 (Hg38)
Nearest miRNA
hsa-mir-1244-3/Upstream/533326; hsa-let-7i/Downstream/6004823;
Nearest TSS
ENST00000382841/Upstream/4650; ENST00000536967/Downstream/40016;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2295120, chr12-CpG: 131/Downstream/921793
Nearby gene
PIK3C2G
Upstream sequence
atacaccatggaatactatacagccataaaaaagaatgagttaatgtcctttgcagggacatggatgacactagaaactatcattctcagcaaactaaca
Downstream sequence
cccagccactcaagctacaaacttgaaaaccatctttgactcctcccttttccAATCAGTTTGGAAAAAGGTTTATATCTTAACCTTTTTAAGAAAAACA
Target sequence
GTTGCAAGAGAAAGTCTTGTCATTACAAAACATCAAGACTTTAAGGAAAGAAAATCAATCTCTAGGTGTGCtttttttttttttcctttcttttcttgtcttAAGGAATGAGGTATCCATAGCTTGCCTGAGGATAATCCTTCACCTGTGTTTGAGATTCACAacctgctatctcaggggttttattctaacagtttcaactaacagccaaataccaatcattgccaaacctacatctctagctctgaatttttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate