Basic Information
VIS ID
TVIS10019252
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
54921702/54454984 (Hg38)
End
54921791/54455073 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/506500; hsa-mir-1185-1/Downstream/423040;
Nearest TSS
ENST00000550708/Upstream/13553; ENST00000554046/Downstream/15636;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/13465, chr14-CpG: 48/Downstream/33597
Nearby gene
GMFB
Upstream sequence
CAAGCAAGAGCTAACTAGGGGTAGGTGGGTGCAAGAGGACGAATTATGGGGACTATCCAACTGTAGGGGATGGGGCAGTATGACATGTTGATTTCTGACC
Downstream sequence
cgaggcgggcggatcacttgaggtcaggagtttgaggccagcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccagatgtga
Target sequence
AAAATTATAAACATAAAACACCAAAATAAAAAAGGAAACAGAggccaggcgtggtggctcctgtctgtaatcccagcactttgggaggc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate