Basic Information
VIS ID
TVIS10019253
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
2778250/2728249 (Hg38)
End
2778339/2728338 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/196244; hsa-mir-11401/Downstream/757043;
Nearest TSS
ENST00000527434/Upstream/7698; ENST00000574340/Downstream/12466;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/6845, chr16-CpG: 166/Downstream/23574
Nearby gene
SRRM2-AS1
Upstream sequence
TTAACATGACGTGGATGAAGTGGTTCTGTCATCATTAAATGAGTACTTTCGGATCCAAGTCTGACATAAAAACTTACTTCCCTGAAGACTTTAATTTTGC
Downstream sequence
GGACTTCAACACCCACTTCAGGAACCATttttattttatttcattttattttaatttattttttgagacagggcctcactctgctgctcaggctggagtg
Target sequence
AAAAATTTCACCCAAGACATTCAATGAGTCAGCTGACCTCACCACATCTGTAATTGTCATATTCCCCCAAAACGTGTCAAGGGAAGTCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate