VISDB Viral Integration Site DataBase

VIS ID

TVIS10019254

Fusion event

HBV-BPTF integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

q24.2

Reference genome

Start

End

65934291/67938175 (Hg38)

Location type

Intron20

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-877-3p ; hsa-mir-455-3p ; hsa-mir-33b-5p ; hsa-mir-342-3p ; hsa-mir-378a-3p ; hsa-mir-222-3p ; hsa-mir-204-5p ; hsa-mir-181b-5p ; hsa-mir-25-3p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-7855-5p ; hsa-mir-4642 ; hsa-mir-1273e ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-4722-5p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-4257 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-4724-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3121-3p ; hsa-mir-5001-3p ; hsa-mir-891a-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-3677-5p ; hsa-mir-216a-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4317 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10226/Upstream/466575; hsa-mir-1250/Downstream/486276;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/112238, chr17-CpG: 151/Downstream/54930

Upstream sequence

TCTGGCTGAAGTACCTTTTCATTCTTCTCAGAGCCTTTCACTGAGAGAACTTTTAGCTGAGGAGAAAGAGGAAATCCcaagtccttaaatgtcaccttct

Downstream sequence

CCTATTGGAGATCATCTGGGTGGCTTATAAAAATGAATCAGTACCAATCCTTTTATCTGTCTCTGCTTATGATGGCAATGTATCTGTACCAGGTGATCTC

Target sequence

ATAAATTGATATATA