hsa-mir-3199 _LIHC.png
C3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019255
Fusion event
HBV-C3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
End
6678162/6678151 (Hg38)
Location type
Exon1
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-6516-5p ; hsa-mir-550b-2-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-1227-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-4252 ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-1247-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6889-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-5001-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4486 ; hsa-mir-4522 ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-939-3p ; hsa-mir-4432 ; hsa-mir-589-3p ; hsa-mir-5698 ; hsa-mir-6722-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1306-5p ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-4532 ; hsa-mir-6890-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-1273e ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-6787-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-302f ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-7703 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-127-5p ; hsa-mir-1297 ; hsa-mir-25-5p ; hsa-mir-26a-5p ; hsa-mir-3192-5p ; hsa-mir-3199 ; hsa-mir-320e ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-3928-5p ; hsa-mir-4459 ; hsa-mir-4465 ; hsa-mir-4635 ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-552-3p ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6087 ; hsa-mir-658 ; hsa-mir-6806-3p ; hsa-mir-6819-3p ; hsa-mir-6877-3p ; hsa-mir-7843-3p ; hsa-mir-8052
Nearest miRNA
hsa-mir-1227/Upstream/261511; hsa-let-7e/Downstream/58561;
Upstream sequence
CGCCGAGGTCCTGGCATTGTTTCTGGTTCTCTTCGTCTTGGCATTCGTCCTCCTCGGGCCAGTGCTCCACCCAAGTGTCCTTCCCGATGATGTAGCTGAG
Downstream sequence
TTGGGCTTCTCTCCCCAGAAATCGGAGGAGAGACCCCACATGAGGTAGTGTTTCTTCTCCTCCAGCTTCAGGGCTTCTCTGCACTTGATGGGGCTGATGA
Target sequence
GCTGGAGGGAAGAATGGCAGGTCAGGAAGGGGCGTGGTGTGGGCGTGGCGCAGGGGCGTGACAATGGTGTGGGCGTGGCATGGGCGGGGCAGTCGGGCGGTCGCGCGCACGCGCAGGGAAAGCACTCAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate