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VISDB
Viral Integration Site DataBase
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TVIS10019255
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019255
Fusion event
HBV-C3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6678033/6678022 (Hg38)
End
6678162/6678151 (Hg38)
Location type
Exon1
Fragile sites / regions
FRA19B
Target gene
C3
miRNAs that regulate target gene
hsa-mir-98-5p
;
hsa-mir-26b-5p
;
hsa-mir-6516-5p
;
hsa-mir-550b-2-5p
;
hsa-mir-455-3p
;
hsa-mir-7847-3p
;
hsa-mir-1227-3p
;
hsa-mir-6880-5p
;
hsa-mir-6799-5p
;
hsa-mir-6851-5p
;
hsa-mir-4252
;
hsa-mir-3689d
;
hsa-mir-6499-3p
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-6134
;
hsa-mir-4537
;
hsa-mir-5186
;
hsa-mir-1247-3p
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-6889-3p
;
hsa-mir-6504-3p
;
hsa-mir-4438
;
hsa-mir-5001-3p
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-6729-5p
;
hsa-mir-4649-5p
;
hsa-mir-1273a
;
hsa-mir-661
;
hsa-mir-4486
;
hsa-mir-4522
;
hsa-mir-766-3p
;
hsa-mir-6849-3p
;
hsa-mir-939-3p
;
hsa-mir-4432
;
hsa-mir-589-3p
;
hsa-mir-5698
;
hsa-mir-6722-5p
;
hsa-mir-4638-5p
;
hsa-mir-1307-3p
;
hsa-mir-6741-3p
;
hsa-mir-1306-5p
;
hsa-mir-4284
;
hsa-mir-122-5p
;
hsa-mir-504-3p
;
hsa-mir-3135b
;
hsa-mir-4772-3p
;
hsa-mir-1304-3p
;
hsa-mir-4532
;
hsa-mir-6890-3p
;
hsa-mir-665
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-1273e
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-7160-5p
;
hsa-mir-4722-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-1827
;
hsa-mir-219b-3p
;
hsa-mir-4649-3p
;
hsa-mir-4768-3p
;
hsa-mir-6787-3p
;
hsa-mir-5690
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-890
;
hsa-mir-302f
;
hsa-mir-216b-5p
;
hsa-mir-216a-5p
;
hsa-mir-7703
;
hsa-mir-4793-3p
;
hsa-mir-1273g-3p
;
hsa-mir-127-5p
;
hsa-mir-1297
;
hsa-mir-25-5p
;
hsa-mir-26a-5p
;
hsa-mir-3192-5p
;
hsa-mir-3199
;
hsa-mir-320e
;
hsa-mir-365a-5p
;
hsa-mir-365b-5p
;
hsa-mir-3928-5p
;
hsa-mir-4459
;
hsa-mir-4465
;
hsa-mir-4635
;
hsa-mir-513c-5p
;
hsa-mir-514b-5p
;
hsa-mir-552-3p
;
hsa-mir-562
;
hsa-mir-5697
;
hsa-mir-6087
;
hsa-mir-658
;
hsa-mir-6806-3p
;
hsa-mir-6819-3p
;
hsa-mir-6877-3p
;
hsa-mir-7843-3p
;
hsa-mir-8052
Nearest miRNA
hsa-mir-1227/Upstream/261511; hsa-let-7e/Downstream/58561;
Nearest TSS
ENST00000633603/Upstream/7434;
ENST00000596543/Downstream/179;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/17939
,
chr19-CpG: 39/Downstream/28950
Upstream sequence
CGCCGAGGTCCTGGCATTGTTTCTGGTTCTCTTCGTCTTGGCATTCGTCCTCCTCGGGCCAGTGCTCCACCCAAGTGTCCTTCCCGATGATGTAGCTGAG
Downstream sequence
TTGGGCTTCTCTCCCCAGAAATCGGAGGAGAGACCCCACATGAGGTAGTGTTTCTTCTCCTCCAGCTTCAGGGCTTCTCTGCACTTGATGGGGCTGATGA
Target sequence
GCTGGAGGGAAGAATGGCAGGTCAGGAAGGGGCGTGGTGTGGGCGTGGCGCAGGGGCGTGACAATGGTGTGGGCGTGGCATGGGCGGGGCAGTCGGGCGGTCGCGCGCACGCGCAGGGAAAGCACTCAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Sample Information
×
Sample name
180N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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