Basic Information
VIS ID
TVIS10019256
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
16324762/14952441 (Hg38)
End
16324762/14952441 (Hg38)
Fragile sites / regions
FRA21A
Nearest miRNA
hsa-mir-10396a/Upstream/1228167; hsa-let-7c/Downstream/1586648;
Nearest TSS
ENST00000624081/Upstream/33889; ENST00000446301/Downstream/8868;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/568676, chr21-CpG: 171/Downstream/111734
Nearby gene
NRIP1
Upstream sequence
gtaataaaaagaagtgagatattaagccacaaaaagacaggaagaaaccttaaatgcacattactaagtggatgcgtcactctgaaaaggcgacacactg
Downstream sequence
tatgatttcaactacgtgacagtattgtaaagggcaaaactggtggcagtaatcagccattgtcaagggcttatcgtagagatgaaggtagggatgggtg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate