Basic Information
VIS ID
TVIS10019257
Fusion event
HBV-LOC107984915 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
8203643/8143583 (Hg38)
End
8203643/8143583 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
LOC107984915
Nearest miRNA
hsa-mir-12136/Upstream/1713687; hsa-mir-101-1/Downstream/722919;
Nearest TSS
ENST00000473358/Upstream/116845; ENST00000635451/Downstream/58846;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/116789, chr1-CpG: 15/Downstream/68353
Nearby gene
LINC01714
Upstream sequence
TGAATACAATTATGTGAAAAAATATTTGCATAAAAGTTGATTGAAGGCAAATTTATGAAATGTAAATAGAGGTTTTGTTTGGGTTGCTGGGCCCTAGGAG
Downstream sequence
CTTGGTCTCGAATTTGGTTAACATCTCTCAGGTCTCCGACTCCGATGTCTTAATCCGAGCCCCGACACACCCTGCTGCCCTTCGGACGCCTCCACGTCAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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