SLC45A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019258
Fusion event
HBV-SLC45A1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
8387137/8327077 (Hg38)
End
8387137/8327077 (Hg38)
Location type
Intron4
Fragile sites / regions
FRA1A
Target gene
SLC45A1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-12136/Upstream/1897181; hsa-mir-101-1/Downstream/539425;
Nearest TSS
ENST00000473358/Upstream/2747; ENST00000481265/Downstream/3061;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/969, chr1-CpG: 46/Downstream/3065
Upstream sequence
gtttttcaccgctctgccaattcacatgtctgaatgactgtgaaagcaccatgaggattatttgggggttacaaataatttatagtgaataatcatattt
Downstream sequence
aatttccctgcacaagctcagtcttctcttgtctgctgccatgtgagatgtgactttcattttctgccatgactgtgaggcctccccagccacgtggaag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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