Basic Information
VIS ID
TVIS10019259
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
80644116/80178431 (Hg38)
End
80644116/80178431 (Hg38)
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/3118229; hsa-mir-11399/Downstream/4955363;
Nearest TSS
ENST00000473358/Upstream/63488; ENST00000418041/Downstream/196190;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1171579, chr1-CpG: 24/Downstream/152541
Nearby gene
LINC01781
Upstream sequence
agagagggcttttcaggtcctgggtgaattcaaagatttccaaagattggcaatgggttgaaaaagttaagttttgcctgagaagagttgaagtcagcat
Downstream sequence
atttcctgtttaggacagggtggctagccactctggtgctgaaaccccaagttagctgggccctctcaaaacaACACTTGCCTCTATTTACCCATGTTCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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