Basic Information
VIS ID
TVIS10019260
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
89645787/89180104 (Hg38)
End
89645787/89180104 (Hg38)
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/2822417; hsa-mir-11399/Downstream/4666728;
Nearest TSS
ENST00000473358/Upstream/4064; ENST00000641099/Downstream/5294;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/187183, chr1-CpG: 114/Downstream/344147
Nearby gene
GBP4
Upstream sequence
AGAAAATGGAATTTTTCCTAGGTGCCCCGCTTGCTCTTCTGAATTAATTACAAAATTTCCTTTGGAAGCTTTTCACGTTCACATTTAGATCTTTGGACTG
Downstream sequence
GTCCATTCAACACTTTTCCTGTATTTTACATGCTTGTATTTTATGCAACTTAACAGTAGTGCTCTGAAATACTGACCTAAGGAAAATGCTGATTGCTAAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate