Basic Information
VIS ID
TVIS10019261
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
104749617/104206995 (Hg38)
End
104749716/104207094 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/3925687; hsa-mir-11399/Downstream/3690129;
Nearest TSS
ENST00000473358/Upstream/456589; ENST00000635102/Downstream/1398909;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/680704, chr1-CpG: 37/Downstream/1873677
Nearby gene
LOC100129138
Upstream sequence
tctccatgttggtcaggctgctctcaaactcccgacctcaggtgatctgcccgcctcggcctcccacagtgctgggattacaggcgtgagccacggcgcc
Downstream sequence
gggtacttgaagtgttgtttccactgaatgcatattgctttcaccttattataaagttaaaaaaattgtacatggagccattgaaagccaaggaccatct
Target sequence
aaatcatataacaacaagactattttcataataatgtgctgaatatctaatgtaatttattgaatactgtactgaaagtgaaaaagaaaatggttgtat
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate