Basic Information
VIS ID
TVIS10019262
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192879495/192910365 (Hg38)
End
192879495/192910365 (Hg38)
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/193975; hsa-mir-1182/Downstream/226138;
Nearest TSS
ENST00000473358/Upstream/101222; ENST00000469214/Downstream/15350;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/101297, chr1-CpG: 94/Downstream/148726
Nearby gene
LINC01032
Upstream sequence
tactattcagcgataaagagggatgaagaactgactcatgttacaatatggatgaaccttcataacaaatgaagttatatgaagataataagagaaagaa
Downstream sequence
gcctgagatccaagaaccctctcttgaggtctgaatcaggtctcctttctggtaataggaggatcacttgaggccaggagttcgaggctgcagtgagcca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate