RPS6KC1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019264
Fusion event
HBV-RPS6KC1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213435357/213262014 (Hg38)
End
213435357/213262014 (Hg38)
Location type
Intron13
Target gene
RPS6KC1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1184329; hsa-mir-1182/Downstream/6855839;
Nearest TSS
ENST00000473358/Upstream/19954; ENST00000417161/Downstream/230287;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/210489, chr1-CpG: 19/Downstream/127382
Upstream sequence
ATTGTTCAATGTCACTTCCACAGAGCTTGTTATTGTTAAGTCTTGGCCTCATTTACAAATTTTATTTCTTTAAACCTTAAGCTGCATTTACAAATGTAGT
Downstream sequence
GTTTGGATTTTCCTTTCTTCCGCCCCCTCCCCCGCCTCCCCACCCagatggagtttcactcttgttgcccaggctggagtgcaatggtgcaatctggctc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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