CENPF _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019266
Fusion event
HBV-CENPF integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
214777666/214604323 (Hg38)
End
214777666/214604323 (Hg38)
Location type
Intron1
Target gene
CENPF
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-375 ; hsa-mir-122-5p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-16-5p ; hsa-mir-1226-3p ; hsa-mir-877-5p ; hsa-mir-93-3p ; hsa-mir-148a-5p ; hsa-mir-205-5p
Nearest miRNA
hsa-mir-101-1/Upstream/2526638; hsa-mir-1182/Downstream/5513530;
Nearest TSS
ENST00000473358/Upstream/839; ENST00000614578/Downstream/43644;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/731, chr1-CpG: 78/Downstream/1242
Upstream sequence
GAGAAAATAACGATGAAACTTAAGAGTATTGAAATATTTATTTTTCAAAAGTAATCTACTTTATTAATATTATTTGCTTCTTTTTTCATGGTTGTAGGTT
Downstream sequence
aaagaaatgcttgagtcaagatgaggggggtagtggaagccaaggttcttgttatgtccgtgaagcctgtaagtaacaggcttcagagagaatggatggt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate