Basic Information
VIS ID
TVIS10019267
Fusion event
HBV-LOC107985364 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
GRCh37/hg19
Start
234897850/234762103 (Hg38)
End
234897850/234762103 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC107985364
Nearest miRNA
hsa-mir-101-1/Upstream/455564; hsa-mir-1537/Downstream/427931;
Nearest TSS
ENST00000473358/Upstream/2047; ENST00000423963/Downstream/195128;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/150825, chr1-CpG: 30/Downstream/342136
Nearby gene
LINC01132
Upstream sequence
actacacattgttagaggtaaattgacacaagtgttttcaaaaataattcaatattatcttgtaaagctgaattttcatgcattctacaatccagaaatt
Downstream sequence
tggTGACTCAGTTCTTAATGccttgcatatactgttctctctttatggaatgtaactccctgtggctccacttatcaaacccccactcatttatcaaggc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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