Basic Information
VIS ID
TVIS10019269
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
238262892/238099592 (Hg38)
End
238262895/238099595 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/628401; hsa-mir-3123/Downstream/3032677;
Nearest TSS
ENST00000473358/Upstream/154317; ENST00000422844/Downstream/176442;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/315444, chr1-CpG: 91/Downstream/1287360
Nearby gene
ZP4
Upstream sequence
CCTGCCACAGGCTGCCGCTGGGGCACTCACCTCCTGTATCGTGCTACTGGCAGGGTTCTCTTTTTCCTAAGAGACTTGGTCTCTTCTTTGTTTTTTGTTT
Downstream sequence
ATGAGATCATCATTTTTGAAACTATTTCTTACCTGGTGTGTATGTGTATTCTGGGCACTAAAGTCTTGACTGAAATTGTAAGTTACGACCCATCTGATAA
Target sequence
ACA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate