Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019270
Fusion event
HBV-FMN2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
End
240458940/240295640 (Hg38)
Location type
Intron8
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-101-1/Upstream/2824449; hsa-mir-3123/Downstream/836632;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/87414, chr1-CpG: 26/Downstream/110380
Upstream sequence
ctcaaaaacaaacaaacaaacaaacaccaactcttgtttccagtatgagcgtggagacgagaaggcagagctcagccctgcggggcctcagctggatcac
Downstream sequence
CATTGCATTGCTTTTTTCTTACAGACATTTTGATAATTGTTGATTTTCATAAGTTTGATAGAAGAATGCCATTAATACTTCTCATTTATTTTTCATTATC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.