Basic Information
VIS ID
TVIS10019271
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
6922645/6782514 (Hg38)
End
6922645/6782514 (Hg38)
Nearest miRNA
hsa-mir-7158/Upstream/132075; hsa-mir-10b/Downstream/3410100;
Nearest TSS
ENST00000437798/Upstream/12203; ENST00000474872/Downstream/51017;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/286486, chr2-CpG: 137/Downstream/82518
Nearby gene
NRIR
Upstream sequence
GTAGTCACATCTATAATCATTGCCCTGTAAATTGGGTTGCTTTTTCGACATATTTAGAGGTTTGCTTTTCCTCTCTCTTTGATGACAGAGACGGTGGGTT
Downstream sequence
TCAGCATCACATTTAGGACTGGGAAGCAGGGCTGTCTCCTGGAGATGCATCCAGTTCCCTGATAGGGTGGCTTTACGATTCATGTTTGCGGAGTATTTCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate