Basic Information
VIS ID
TVIS10019273
Fusion event
HBV-LOC107985869 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
37997955/37770812 (Hg38)
End
37998044/37770901 (Hg38)
Location type
Intronic
Target gene
LOC107985869
Nearest miRNA
hsa-mir-1301/Upstream/2299326; hsa-mir-10b/Downstream/9606774;
Nearest TSS
ENST00000437798/Upstream/26479; ENST00000402091/Downstream/58531;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/98125, chr2-CpG: 79/Downstream/154130
Nearby gene
LINC00211
Upstream sequence
agtccgaaaagagagtcagcgaagggagataggggtggggctgttttatagaatttgggtaggtaaaggaaaaagtggggttgttctctgaagggcagga
Downstream sequence
GGTCTGGACCTTCCAGGCAAGTCCCTGGCTCTGCTCAGGAAGTCTAGCCATCTGCTGATGCCATGtgatatggtttggctgtgtccccacccaaatatca
Target sequence
TCCTTTTTTCACTATTTCTTGAGTAGGATACCAAGTGTAACACACACTGGAGTGTCTTTCAACTCCACAAGGAAGCTGGAACTCAGAGG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate