Basic Information
VIS ID
TVIS10019275
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
174269038/173404310 (Hg38)
End
174269038/173404310 (Hg38)
Fragile sites / regions
FRA2G
Nearest miRNA
hsa-mir-128-1/Upstream/4821292; hsa-mir-10b/Downstream/1763323;
Nearest TSS
ENST00000437798/Upstream/45803; ENST00000604994/Downstream/406766;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/48670, chr2-CpG: 54/Downstream/559292
Nearby gene
CDCA7
Upstream sequence
TCTGAACTCATTTAGAAAATCCTGCCCCCTTGGACCCAAAGCATCTAACACCATCTATAATACCAATCCAAGGTGTTATATTCCAAACTATAATGTTCTA
Downstream sequence
AATCTATGGACTAGCTGCATGCAGCATTCCCTTTGCTATTTATATGCAAGACTGCGAGTTTAAAAAAATTCATGTAATGAATGAATTTTAATTGTTGAGG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate