Basic Information
VIS ID
TVIS10019281
Fusion event
HBV-LOC107985985 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
217251852/216387129 (Hg38)
End
217251852/216387129 (Hg38)
Location type
Intronic
Target gene
LOC107985985
Nearest miRNA
hsa-mir-10b/Upstream/2628970; hsa-mir-1244-1/Downstream/1513384;
Nearest TSS
ENST00000437798/Upstream/15102; ENST00000496037/Downstream/25285;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/14721, chr2-CpG: 45/Downstream/25185
Nearby gene
SMARCAL1
Upstream sequence
ACTTGGAAATGTGAGATGGCTGTGGTGCATTCCACTGGATGGGGTGGGAGTTGGGCTGACTCGGAGTCTCAGTGATAAATACTTCGACAGGACCACTTGA
Downstream sequence
GTATAAACATTTTTCTAAAGATTCCTCTCTTTTATTTTCTTTAATTTTTTTATTGACATGGGGAGTAAAGGAAAGACAAGCATGATTTTTTGCTAATCCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate