Basic Information
VIS ID
TVIS10019283
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
22762094/22720603 (Hg38)
End
22762094/22720603 (Hg38)
Nearest miRNA
hsa-mir-12127/Upstream/2582962; hsa-let-7g/Downstream/2944270;
Nearest TSS
ENST00000440867/Upstream/347282; ENST00000628311/Downstream/481930;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/347729, chr3-CpG: 106/Downstream/481956
Nearby gene
UBE2E2
Upstream sequence
ATTGTTTTCATTATTATTTTTAACTTACAACAACTGGAGTTTGGCTTGTCAAGAGTCGTGCAGAATTAAAGAGTCTGTCTTTCATGGGGACAAATCTTTC
Downstream sequence
TAGTAGTGAGTATTACATAGTGACCTCGAATTTGGCTTTAAAAACATGCTGGCAAAGGTCCTAAGGGATAAAAGAGACTATAATAAACAGGTAGCAGGCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate