Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019286
Fusion event
HBV-ULK4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
Start
End
41632600/41591109 (Hg38)
Location type
Intron6
Target gene
Nearest miRNA
hsa-mir-12127/Upstream/2452843; hsa-let-7g/Downstream/2523103;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/390969, chr3-CpG: 17/Downstream/300008
Upstream sequence
tgattctcctgcctcagcctcctgagtagatgggattacaggtgtgccataccacacccggctaatttttgtgtttttagtagagatggggtttcaccat
Downstream sequence
attacatagaaaagaacaagtataaaaatgacagcagacttattagtaactgtgcaagccagaagacaatgaaaagcaactttgaagtattaaaagaaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.