Basic Information
VIS ID
TVIS10019289
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
186341530/186623741 (Hg38)
End
186341530/186623741 (Hg38)
Fragile sites / regions
FRA3C
Nearest miRNA
hsa-let-7g/Upstream/855837; hsa-mir-1248/Downstream/162931;
Nearest TSS
ENST00000440867/Upstream/10656; ENST00000488561/Downstream/12228;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/52892, chr3-CpG: 20/Downstream/149072
Nearby gene
AHSG
Upstream sequence
TAATTACTTTGTCAAAAAATATTTTCTGAGTATCTTTAATGATTATAATATATTGTGATATAAGCTAAGttctttttttttttccccctgatacagggtc
Downstream sequence
TTTTTCCATACTTGTGTCACTACTACCAATTAAGAATATTTGGTGGATGTTAAGATAATACAAAAATTGTccaggcacggtggctcatgcctgtaatcct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate