Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019290
Fusion event
HBV-STK32B integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
Start
End
5459342/5457615 (Hg38)
Location type
Intron8
Target gene
Nearest miRNA
hsa-mir-4800/Upstream/3207459; hsa-mir-12113/Downstream/465660;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/405458, chr4-CpG: 18/Downstream/110793
Upstream sequence
TTCTTAAGCTTATCCTCTTAATCTTTTCATGTAAGCAAAGCTCATTAATTTCTGTCTTGGAAATGCTACTACTCTCTTTAATTACTCACCAAATCCAACT
Downstream sequence
ccagcactttgggaggctgaggtgggtggatcacatgaggtcaggagttcgagaccagcctggccagcatggagaaaccccgtctctctaaaaatacaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.