Basic Information
VIS ID
TVIS10019291
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
10903537/10901913 (Hg38)
End
10903537/10901913 (Hg38)
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-3138/Upstream/823221; hsa-mir-12113/Downstream/466914;
Nearest TSS
ENST00000502981/Upstream/164341; ENST00000515343/Downstream/526684;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/439848, chr4-CpG: 74/Downstream/466757
Nearby gene
CLNK
Upstream sequence
TGCCATTCACAGCTTTGCCCACACACCTGTGTGTGTGAAGCCACCCCAGGGCACACTAGACAGTCACTCCCTCCATGGCCACACAAAGTCCACTTCTTTG
Downstream sequence
acgtgtaccatggtggtttgctgtacctgtcaacccatcacctaggattaagccccgcatgcattacttatttatcctgatgtgctccctctccatgccc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate