Basic Information
VIS ID
TVIS10019293
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74259967/73394250 (Hg38)
End
74259967/73394250 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/7117322; hsa-mir-1243/Downstream/3179318;
Nearest TSS
ENST00000502981/Upstream/135041; ENST00000510166/Downstream/2864;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/134837, chr4-CpG: 20/Downstream/226077
Nearby gene
ALB
Upstream sequence
gagaatggcgtgaacccgggaagcggagcttgcagtgagccgagattgcgccactgcagtccgcagtccggcctgggcgacagagcgagactccgtctca
Downstream sequence
cactgctggtaaagcgctgctgagaacagggactggcatgtttgaaggcattttataagtgcttgttaAACAAACAGGGCATCCCCTGCTGTCCTCTTTC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate