Basic Information
VIS ID
TVIS10019297
Fusion event
HBV-LOC101927414 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
138578964/137657810 (Hg38)
End
138578966/137657812 (Hg38)
Location type
Intronic
Target gene
LOC101927414
Nearest miRNA
hsa-mir-12113/Upstream/12150503; hsa-mir-1305/Downstream/5685648;
Nearest TSS
ENST00000502981/Upstream/2636; ENST00000506420/Downstream/77165;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/845222, chr4-CpG: 21/Downstream/902768
Nearby gene
PCDH18
Upstream sequence
tcttatcagcatgtagccagcaatattgtgacatttttactgcagagtgaatgatgactggggcatcttaaatggagttctggggtgtttctttctgcat
Downstream sequence
TGATTACAGTTCTTTTTCTGCTTTGGCCCAATCACCACCACACTGAAGTAAAACTACTCTGCTATTATTTGTAATAAAATCTATGCCCCTCCCAACATAG
Target sequence
CA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate