VISDB Viral Integration Site DataBase

VIS ID

TVIS10019299

Fusion event

HBV-FGB integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr4

Cytoband

q31.3

Reference genome

Start

End

155493584/154572432 (Hg38)

Location type

Exon8

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-29c-3p ; hsa-mir-144-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-5096 ; hsa-mir-5587-5p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-197-3p ; hsa-mir-6832-5p ; hsa-mir-6801-5p ; hsa-mir-193b-5p ; hsa-mir-1279 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6890-5p

Nearest miRNA

hsa-mir-12113/Upstream/2035439; hsa-mir-1305/Downstream/4556370;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/21425, chr4-CpG: 39/Downstream/54400

Upstream sequence

ggttaggggttagggtcagggtcagggtcagggtcagggtcaggggtagggtagggttagggttagggttagggttagggttagggttgggttagggtta

Downstream sequence

taaagagtatgtagtttatataacatttctacttagcactctccacttagcaacctccatttaacccaaaataaaaggccttggttccttgcacatcctg

Target sequence

TTAACTTTTGACCTGGTTTCTCTGCCACAAGTTCTGTCCCACTGGAGCCCATACTCACCTACCGCTTTGCCATCACATTTAACAGAAAACTCTTATCAACTTACTTCCTGCTTAACATTAGCTCCTTCCTATCTATATCCAAATTTCTTAAATTCAAATTTTTTAGCTGGAGTAAAAATGGTCCCAGTACCATTTCCTGTTCCCTTCACTATAACCTACATTTTTGTCACATTAAGTTTTTCCCCATTCCAGGAC