hsa-mir-6844 _LIHC.png
GALNTL6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019300
Fusion event
HBV-GALNTL6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
173884868/172963717 (Hg38)
End
173884868/172963717 (Hg38)
Location type
Intron10
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/1777425; hsa-mir-1305/Downstream/304443;
Nearest TSS
ENST00000502981/Upstream/154357; ENST00000502407/Downstream/205036;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1149750, chr4-CpG: 154/Downstream/205075
Upstream sequence
TCTAAAGAGGAAATGAAATATTTTACAGAACATTTTCTGTACTTGCATCCAATCAAACTATATTACAAATTAAAGTAGAAGAGTGAATACTCCTACATAC
Downstream sequence
GAAAGCTCGGCCAGAAAGGCAGTTTGAGTAATGACTCTCAGGTAACTGATTCTCATGAACAGTCGGGTCTGTGGTCCATTTGATAGTTAAACAAGTTACA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate