Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019304
Fusion event
HBV-SNCAIP integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
End
121738506/122402811 (Hg38)
Location type
Intron2
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/3248095; hsa-mir-103a-1/Downstream/6694877;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/90359, chr5-CpG: 54/Downstream/372033
Upstream sequence
CACCTCGCGGTAGTGGCTGCGCAGCAGGGAGCGCACGGCTCGGCAGCGGGGAGCGCGCGGCATCGCGGGGGTGGCCGGGGCCAGGGCTTCCCACGTGCGC
Downstream sequence
TGCAATGGTGAAGTAATTTATGATACAAGCTCATTTACTTTAAGAACATTGTCCTTAGAGGTAAAAAGCAAAATAGTTTCAGGGAGCTGCATTTTATGAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.