Basic Information
VIS ID
TVIS10019305
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
125637445/126301753 (Hg38)
End
125637546/126301854 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/7147037; hsa-mir-103a-1/Downstream/2795834;
Nearest TSS
ENST00000502646/Upstream/21952; ENST00000505720/Downstream/58278;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1649698, chr5-CpG: 30/Downstream/121501
Nearby gene
LOC101927488
Upstream sequence
GACAGCTGAGGACTTCCCAGGAATCCAGACTCCGGGTTGCTCAAGTTTGGATCTAAGGGGCGAGAAACTTCTGGGTCTCCCGAGGCCTTGCAGGGATGCT
Downstream sequence
ctggctaattttcttgtatttttagtaaagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgccttggcttcc
Target sequence
ggcacaatctcagctcactgtaggctccgcctcccgggttcacgccattctcctgcctcagcctcccaagtggctgggactacaggtgcccaccaccacgc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate