CLINT1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019307
Fusion event
HBV-CLINT1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
157234515/157807507 (Hg38)
End
157234520/157807512 (Hg38)
Location type
Intron6
Target gene
CLINT1
miRNAs that regulate target gene
hsa-mir-145-5p ; hsa-mir-155-5p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-10397/Upstream/2977967; hsa-mir-103a-1/Downstream/2666890;
Nearest TSS
ENST00000502646/Upstream/1495; ENST00000522975/Downstream/51621;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/63194, chr5-CpG: 54/Downstream/51249
Upstream sequence
TCCGCCACGTGGGAAGCGCGGTCCTGGGCGTCTGTGCCCGCGAATCCACTGGGAGCCCGGCCTGGCCCCGACAGCGCAGCTGCTCCGGGCGGACCCGGGG
Downstream sequence
TATGAAATTCAGGTAACATGCCATCAGGATTGAGGTCATATGCAACTCTGTCAAAAAATCTACTCTTCTCTCACAAATACTTTAAGATAAAAAGTTCCTG
Target sequence
ATAAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate