Basic Information
VIS ID
TVIS10019308
Fusion event
HBV-LINC00240 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
26986361/27018582 (Hg38)
End
26986361/27018582 (Hg38)
Location type
Intron2
Target gene
LINC00240
Nearest miRNA
hsa-mir-3691/Upstream/8446702; hsa-mir-10398/Downstream/129044;
Nearest TSS
ENST00000381078/Upstream/16934; ENST00000424968/Downstream/1871;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/122585, chr6-CpG: 43/Downstream/1237
Upstream sequence
AAATGGGGAGGCTGAGCCAGCTTGCTTTCTCTCCAGCTTCCTCCCTGAGCTTAGCAGCCGACCTTTTGGCTCAGCGACGGGCCTGCTGGTTAAATGTAAC
Downstream sequence
gatggaaccaatgtacttcttacatatattgactgatgtctcatgtgtccctaaaatgtataaaactaagctgtgccccgattaccttgggcacaggtag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate