Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019310
Fusion event
HBV-LOC730101 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr6
Cytoband
p12.2
Reference genome
Start
End
52530854/52666056 (Hg38)
Location type
Intron1
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/517015; hsa-mir-10524/Downstream/610937;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1203, chr6-CpG: 28/Downstream/4860
Upstream sequence
CTGGATTGTTTTCATTCTCATTAGCATCATAGAACTTATTCATATTGAAGAGCCTATTAAGACACTCAGATAGATGTTACTTCTAGATCTTATATCTTCT
Downstream sequence
AGAATCTtgtggctcagaaagaaagaacctgcctcgggtaatgctactaagaaatgccaaacagaattagaaccagagtctacttaaccccCTTCTCAGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.